Naïve Networking 2
The following note explains how to deploy a high-performance VPN using WireGuard on VPP with DPDK. This lets lab members connect to computation servers from anywhere on the campus network with minimal overhead.
Naïve Networking
The following note outlines how to set up a VPN so that lab members can connect to the computation servers from anywhere on the campus network. 1) Requirements
Unwrap big molecules & self-assemblies in PBC
Periodic boundary conditions (PBC) are ubiquitous in molecular simulations. However, when visualizing results, one often prefers to see whole molecules rather than fragments cut by the simulation box. If the molecule percolates through the box, minimizing artificial cuts becomes essential. Below are two methods for reconstructing intact structures under PBC: